Michael Etienne and Ken Sekimoto,  arXiv: 1710.09319v1 [cond-mat.stat-mech] 25 Oct 2017 (submitted)
   Progressive quenching — Ising chain models
     (We are gradually understanding what does martingale mean for physicists.)

B. Ventéjou and Ken Sekimoto,  arXiv:1710.06166v1 [cond-mat.stat-mech] 17 Oct 2017 (submitted)
   Progressive quenching - Globally coupled model

Caterina De Bacco et al.  arXiv: 1311.3448v2 = Phys.Rev.Lett. 112, 180605 (2014)
   Non-equilibrium statistical mechanics of the heat bath for two Brownian particles
      (If there is a retarded frictional coupling, there must be also a Casimir force !)

Ken Sekimoto, Antoine Fruleux, Ryoichi Kawai and Nathan Ridling, arXiv:1301.7035 = Acta Physica Polonica B 44, 847 (2013)
   From adiabatic piston to non-equilibrium hydrodynamics
      (Heat flux through a dense gas does not cause the disparity between the pressures on the hot and cold walls.)

Ryoichi Kawai, Antoine Fruleux and Ken Sekimoto, arXiv:1204.6536 = Phys. Scr. 86, 058508 (2012)
'A hard disk analysis of momentum deficit due to dissipation'

Antoine Fruleux, Ryoichi Kawai and Ken Sekimoto, arXiv:1109.6553v2  = Phys. Rev. Lett. 108, 160601 (2012)
   'Momentum transfer in non-equilibrium steady states'  
     (The first explanation of the mechanism of adiabatic piston and related phenomena based on energy and momentum.)

Ken Sekimoto;  Lecture Notes in Physics vol. 799
   'Stochastic Energetics' (Springer, Feb. 2010)   [Paperback edition: April 2012]

E. Muneyuki and K. Sekimoto; Phys. Rev. E 81, 011137 (2010)
   A model of reversible pump made of allosterically coupled ratchet subsystems
     (How a single lever can drive directional transport through a channel ?)

Sekimoto, K.; Phys. Rev. E 76, 060103(R) (2007)
   Microscopic heat from the energetics of stochastic phenomena
    (We must distinguish the abstract thermodynamic structure from its specific realization which depends on the scale of description.)

Ken Sekimoto: in Iwanami Publ., Tokyo, (2004)
   'Stochastic Energetics' (book in japanese) [On-demand version,  Jan. 2016]

Ken Sekimoto and Jacques Prost : J. Phys. Chem.  DOI: 10.1021/acs.jpcb.6b01627
   Elastic Anisotropy Scenario for Cooperative Binding of Kinesin Coated Beads on Microtubules

Claire Ribrault, Ken Sekimoto and Antoine Triller : Nature Reviews Neuroscience 12, 375-387 (July 2011)
   From the stochasticity of molecular processes to the variability of synaptic transmission

I. Minoura, E. Katayama, K. Sekimoto and E. Muto: Biophys.J  98, 1589-97 (2010) [featured article->Research Highlights]
  One-dimensional Brownian motion of charged nanoparticles along microtubules : A model system for weak binding interactions

K. Sekimoto and A. Triller: Phys. Rev. E 79, 031905 (2009)
   Compatibility between itinerant synaptic receptors and stable postsynaptic structure

Claire Ribrault, Antoine Triller and Ken Sekimoto: Phys. Rev. E 75 , 021112 (2007) .
   Diffusion trajectory of an asymmetric object: Information overlooked by the mean square displacement

Ken Sekimoto: Comptes Rendus Physique, 8, 650 (2007)
   Bidirectional control --- a unifying view of the structure and function of proteins   

Ken Sekimoto: Physica D 205, 242 (2005) .
   Autonomous free-energy transducer working under thermal fluctuations 

K. Kruse, J.-F. Joanny, F. Julicher, J. Prost, and K. Sekimoto: Eur. Phys. J. E 16 , 5 (2005).
   Generic theory of active polar gels: a paradigm for cytoskeletal dynamics 

K. Kruse J.-F. Joanny, F. Julicher, J. P rost, and K. Sekimoto: Phys. Rev. Lett. 92 , 078101 (2004). [erratum]
   Asters, Vortices, and Rotating Spirals in Active Gels of Polar Filaments 

K. Sekimoto, J. Prost, F. Julicher, H. Boukellal, and A. Bernheim-Grosswasser: Eur. Phys. J. E 13 , 247 (2004).
   Role of tensile stress in actin gels and a symmetry-breaking instability 

G. Facchini, K. Sekimoto,  S. Courrech du Pont; Proc. R. Soc. A 473: 20170076
        (http://dx.doi.org/10.1098/rspa.2017.0076)
      (Can we understand the instability of rolling suitcase by the speed skating? Yes, if you reverse the time.)

A. Fruleux and K. Sekimoto; Phys. Rev. E 94, 013004 (2016)
   Mesoscopic formulas of linear and angular momentum fluxes
     (Irving-Kirkwood formula (1950) relates the macroscopic forces in a dense gas fluid to the dynamics of constituting molecules. Nobody has imagined that this formula could reappear in the description of the dynamics of collective amoeba motion. By looking at the I-K formula as a generic transformation of the momentum flow at small scale to the one at large scale, the formula becomes a powerful tool to combine the vast wisdom of the statistical mechanics and the constructionist approach of complex systems including slime mold.)

L. Pauchard, B. Abou and K. Sekimoto; Langmuir, 25, 6672(2009).
   Influence of nanoparticles mechanical properties on macrocracks formation

Ken Sekimoto; ”Chemomechanical Instabilities in Responsive Materials”, (Springer
Science+Business Media), 241 (2009) (preprint in pdf)
   Internal stress as a link between macroscopic and mesoscopic mechanics
     (Only the non-quasiequilibrium can switch the internal [residual] stress into visible stress and vice versa.)

L. Pauchard, V. Lazarus, B. Abou, K. Sekimoto, G. Aitken and C. Lahanier: Reflets de la Physique, 3, 5 (2007).
   Craquelures dans les couches picturales des peintures d'art (In French)

Ooshida Takeshi and Ken Sekimoto: Phys. Rev. Lett. 95 , 108301 (2005) .
   Internal Stress in a Model Elastoplastic Fluid ,

Y.Miyamoto, H.Yamao and K.Sekimoto; Macromolecules, 36, 6462 (2003)
   Crystallization and Melting of Polyisoprene Rubber under Uniaxial Deformation
      (For rubber glass, the temporal memory can be stocked as a microscopic residual stress.)

S. Twareque Ali, et al. J. Math. Phys., 50, 043517 (2009).
   Noncommutative reading of the complex plane through Delone sequences

C. Dubus, K. Sekimoto and J.-B. Fournier: Proc. Roy. Soc. Lond. A, 462 , 2695 (2006) .
   General up to next-nearest-neighbour elasticity of triangular lattices in three dimensions
      (Lattice version of Stokes theorem explains an extensive boundary terms in the elastic energy.)

Ken Sekimoto : Phys. Rev. Lett. 104, 124302 (2010)
    Newton's cradle vs non-binary collisions
      (Only the soft interaction can realize the rigid-body behavior. We are now preparing its
       experimental realization and theoretical formulation.)

Ken Sekimoto and Takahiko Fujita : http://arxiv.org/abs/1211.0935v2 (pdf) (revised in Nov. 2017)
    Family of self-similar solutions of diffusion equation — Structure and Properties
       (This unpublished technical note summarizes the falimy of scaling functions. As a biproduct
        an origin of the integrating factor is elucidated.)

Ken Sekimoto : a review in Japanese (2010)